PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00356.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 314aa    MW: 34300.2 Da    PI: 4.6203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00356.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19139190256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+ +g   r++lg+++ + +Aa+a+++a+ +++g+
  Zpz_sc00356.1.g00050.1.am.mk 139 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDVPIDAARAYDRAAFRMRGA 190
                                   8********.**********96554..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31138198IPR001471AP2/ERF domain
SMARTSM003805.6E-35139203IPR001471AP2/ERF domain
CDDcd000183.47E-18139198No hitNo description
PROSITE profilePS5103223.156139197IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21139198IPR016177DNA-binding domain
PfamPF008471.7E-13139189IPR001471AP2/ERF domain
PRINTSPR003671.6E-13140151IPR001471AP2/ERF domain
PRINTSPR003671.6E-13179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDFTGDADYF FDLDFIREHL LGSDNGVPVT SWVVSEDSSF PVLPPPAAEP ACQHVPFLSQ  60
QQQQQQQQQP EWYMDMAHDY TSAAPAAAAA GEEACRVQEP VQPVMLMFES DPLSPAISYA  120
SPAATEATAA PVPIEDFRKY RGVRQRPWGK YVAEIRDPKR RGSRVWLGTY DVPIDAARAY  180
DRAAFRMRGA KAILNFPNEV GTRGAHLLAA SAPASAKKRR TRQEDPDVEV IAVVSKAAEI  240
VEVPSWTSTP VSSASSPSST STFQTAEIVA STVTSAASMT ASDGAEWAFP ETPSSWSWEE  300
LLRGRPPLSP HPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-25138202468ATERF1
3gcc_A1e-25138202468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446883.14e-75hypothetical protein SORBIDRAFT_06g024360
TrEMBLW5BC429e-78W5BC42_WHEAT; Uncharacterized protein
STRINGSb06g024360.11e-74(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-23ethylene responsive element binding factor 5